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STRINGSTRING
101245407 protein (Solanum lycopersicum) - STRING interaction network
"101245407" - RNA helicase family protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101245407RNA helicase family protein (1341 aa)    
Predicted Functional Partners:
101245392
annotation not available (893 aa)
     
 
  0.996
101260390
CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
     
 
  0.993
101253879
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (552 aa)
     
 
  0.993
101252639
Uncharacterized protein; CCAAT-binding factor (608 aa)
     
 
  0.993
101257911
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- RNA processing; LOCATED IN- intracellular; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA-processing protein, HAT helix (InterPro-IPR00310 /.../ small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 492 Blast hits to 480 proteins in 206 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (652 aa)
     
 
  0.992
101261410
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPr /.../07276); Has 69842 Blast hits to 35213 proteins in 1572 species- Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source- NCBI BLink) (940 aa)
     
 
  0.990
101259018
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (382 aa)
     
 
  0.986
Solyc02g069770.2.1
annotation not available (516 aa)
     
 
  0.985
101266117
DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family (744 aa)
     
 
  0.984
101254771
annotation not available (820 aa)
     
 
  0.984
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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