STRINGSTRING
Solyc01g095790.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g095790.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g095790.2.1Uncharacterized protein (482 aa)    
Predicted Functional Partners:
Solyc11g067010.1.1
Uncharacterized protein (117 aa)
     
 
  0.933
Solyc09g009300.2.1
Uncharacterized protein (197 aa)
     
 
  0.933
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
       
      0.922
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
       
      0.922
JMJ524
Putative lysine-specific demethylase JMJD5 (398 aa)
       
      0.597
Solyc00g017880.1.1
Annotation not available (1083 aa)
       
      0.597
Solyc09g065690.2.1
Uncharacterized protein (539 aa)
       
      0.534
Solyc01g112370.2.1
Uncharacterized protein (106 aa)
           
  0.491
Solyc01g086860.2.1
Uncharacterized protein (100 aa)
           
  0.491
Solyc09g097880.2.1
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (864 aa)
           
  0.491
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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