STRINGSTRING
Solyc01g096130.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g096130.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g096130.2.1Uncharacterized protein (156 aa)    
Predicted Functional Partners:
Solyc11g019950.1.1
Uncharacterized protein (486 aa)
     
 
  0.737
Solyc08g066020.1.1
Uncharacterized protein (511 aa)
     
 
  0.737
Solyc07g014610.2.1
Uncharacterized protein (933 aa)
       
      0.604
Solyc01g109410.2.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit ; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (434 aa)
       
      0.604
Solyc06g072320.2.1
Uncharacterized protein (489 aa)
     
 
  0.504
Solyc06g030590.1.1
Uncharacterized protein (430 aa)
     
 
  0.504
Solyc03g098220.2.1
Uncharacterized protein (489 aa)
     
 
  0.504
Solyc06g065740.2.1
Golgi SNAP receptor complex member 1 ; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (221 aa)
       
      0.467
Solyc01g091150.2.1
Uncharacterized protein (102 aa)
       
      0.467
Solyc01g091020.2.1
Golgi SNAP receptor complex member 1 ; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (235 aa)
       
      0.467
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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