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RPE1 protein (Solanum lycopersicum) - STRING interaction network
"RPE1" - DNA-directed RNA polymerase V subunit 1 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE1DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)    
Predicted Functional Partners:
Solyc02g044050.1.1
Uncharacterized protein (491 aa)
   
  0.999
Solyc12g037940.1.1
Uncharacterized protein (136 aa)
   
  0.999
Solyc12g035950.1.1
Uncharacterized protein (51 aa)
   
  0.999
Solyc12g035940.1.1
Uncharacterized protein (54 aa)
   
  0.999
Solyc12g035930.1.1
Uncharacterized protein (169 aa)
   
  0.999
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
   
  0.999
Solyc12g035790.1.1
Uncharacterized protein (486 aa)
   
  0.999
Solyc12g017750.1.1
Uncharacterized protein (130 aa)
   
  0.999
RPB2
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1205 aa)
   
  0.999
Solyc10g017920.1.1
Uncharacterized protein (215 aa)
   
  0.999
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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