STRINGSTRING
Solyc01g097600.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g097600.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g097600.1.1Uncharacterized protein (430 aa)    
Predicted Functional Partners:
Solyc11g065180.1.1
Uncharacterized protein (383 aa)
     
      0.907
Solyc04g074090.2.1
Uncharacterized protein (892 aa)
     
      0.882
POLR1B
Probable DNA-directed RNA polymerase I subunit RPA2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
   
        0.838
Solyc01g109990.2.1
Uncharacterized protein (1012 aa)
     
        0.776
Solyc02g088780.2.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (423 aa)
     
        0.772
Solyc01g111030.1.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (470 aa)
     
        0.772
Solyc12g015710.1.1
Uncharacterized protein (564 aa)
     
 
  0.749
Solyc07g052110.2.1
Uncharacterized protein (706 aa)
     
 
  0.749
Solyc07g045070.2.1
Uncharacterized protein (611 aa)
     
 
  0.749
Solyc04g016380.2.1
Uncharacterized protein (312 aa)
     
        0.745
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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