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Solyc01g097860.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g097860.2.1" - Unknown protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g097860.2.1Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown functi /.../1517 (InterPro-IPR010903); Has 276 Blast hits to 275 proteins in 83 species- Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source- NCBI BLink) (288 aa)    
Predicted Functional Partners:
Solyc01g111750.2.1
Protein of unknown function (DUF3353) (305 aa)
   
        0.880
Solyc02g081060.2.1
Chaperonin-like RbcX protein (65 aa)
     
   
  0.879
101262135
Uncharacterized protein; Overexpressor of cationic peroxidase 3 (335 aa)
     
        0.878
101262218
Uncharacterized protein; Rhodanese/Cell cycle control phosphatase superfamily protein (231 aa)
     
        0.875
101257837
annotation not available (342 aa)
     
        0.872
101248693
annotation not available (338 aa)
     
        0.872
Solyc10g080040.1.1
Uncharacterized protein; LOCATED IN- mitochondrion; BEST Arabidopsis thaliana protein match is- Ribonuclease III family protein (TAIR-AT4G37510.1) (593 aa)
     
        0.865
101258281
Lojap-related protein (233 aa)
     
        0.865
101246778
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (400 aa)
     
        0.864
101264457
Zinc finger (Ran-binding) family protein (874 aa)
     
        0.861
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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