STRINGSTRING
Solyc01g098530.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g098530.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g098530.2.1Uncharacterized protein (70 aa)    
Predicted Functional Partners:
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
   
 
  0.999
POLR1B
Probable DNA-directed RNA polymerase I subunit RPA2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
 
  0.878
Solyc07g006090.1.1
Uncharacterized protein (261 aa)
   
 
  0.870
Solyc01g106060.2.1
Uncharacterized protein (242 aa)
   
 
  0.870
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
 
  0.856
Solyc10g079500.1.1
Inosine-5’-monophosphate dehydrogenase (497 aa)
   
 
  0.819
Solyc03g098140.2.1
Uncharacterized protein (343 aa)
   
 
  0.781
Solyc12g008570.1.1
Uncharacterized protein (649 aa)
   
   
  0.771
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
   
   
  0.763
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
         
  0.738
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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