STRINGSTRING
Solyc01g098880.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g098880.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g098880.2.1Uncharacterized protein (447 aa)    
Predicted Functional Partners:
Solyc04g074630.2.1
Uncharacterized protein (433 aa)
   
   
 
0.814
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.771
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
   
  0.725
Solyc00g026870.1.1
Annotation not available (465 aa)
   
   
  0.712
Solyc11g039830.1.1
Uncharacterized protein (738 aa)
     
   
  0.709
Solyc03g118170.2.1
Uncharacterized protein (621 aa)
     
   
  0.709
Solyc05g050940.2.1
Uncharacterized protein (453 aa)
     
 
  0.708
Solyc02g068750.1.1
Uncharacterized protein (346 aa)
     
 
  0.708
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
     
   
  0.685
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
   
   
  0.678
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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