STRINGSTRING
kn4 protein (Solanum lycopersicum) - STRING interaction network
"kn4" - Knotted protein TKN4 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kn4Knotted protein TKN4 (335 aa)    
Predicted Functional Partners:
BL3
Hop-interacting protein THI035 (644 aa)
       
 
0.640
LOC543604
Phantastica (360 aa)
     
 
  0.557
Solyc04g028560.2.1
Uncharacterized protein (777 aa)
     
  0.528
Solyc03g111590.2.1
Uncharacterized protein (1252 aa)
     
  0.528
Solyc11g008830.1.1
Uncharacterized protein (230 aa)
           
  0.516
Solyc11g005690.1.1
Uncharacterized protein (1342 aa)
       
  0.515
CycD3;3
CycD3;3 protein (336 aa)
           
  0.511
20ox-3
Gibberellin 20-oxidase-3 (379 aa)
           
  0.489
20ox-1
Gibberellin 20-oxidase-1 (378 aa)
           
  0.489
FALSIFLORA
FLORICAULA/LEAFY-like protein (429 aa)
     
   
  0.486
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]