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Cel3 protein (Solanum lycopersicum) - STRING interaction network
"Cel3" - Endo-1,4-beta-glucanase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cel3Endo-1,4-beta-glucanase (617 aa)    
Predicted Functional Partners:
Solyc08g061100.2.1
Cellulose synthase (1086 aa)
     
 
  0.875
Solyc07g005840.2.1
Cellulose synthase (1041 aa)
     
 
  0.558
Solyc01g087210.2.1
Cellulose synthase (1083 aa)
     
 
  0.558
CNGC6
Cyclic nucleotide-gated ion channel 1 (405 aa)
           
  0.553
Solyc12g056580.1.1
Cellulose synthase (1083 aa)
     
 
  0.538
Solyc04g072790.1.1
Cellulose synthase (1070 aa)
     
 
  0.538
Solyc04g071650.2.1
Cellulose synthase (1090 aa)
     
 
  0.538
Solyc02g072240.2.1
Cellulose synthase (973 aa)
     
 
  0.531
Solyc09g072820.2.1
Cellulose synthase (1048 aa)
     
 
  0.503
CDPK2
Calcium dependent protein kinase (581 aa)
           
  0.467
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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