STRINGSTRING
Solyc01g102950.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g102950.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g102950.2.1Uncharacterized protein (609 aa)    
Predicted Functional Partners:
Solyc02g062350.2.1
Uncharacterized protein (270 aa)
   
        0.530
Solyc08g041850.2.1
Uncharacterized protein (305 aa)
   
        0.514
Solyc10g079480.1.1
Uncharacterized protein (500 aa)
     
   
  0.512
LCY1
Lycopene beta cyclase, chloroplastic ; Catalyzes the double cyclization reaction which converts lycopene to beta-carotene and neurosporene to beta-zeacarotene (500 aa)
     
   
  0.512
Solyc11g005340.1.1
Uncharacterized protein (256 aa)
   
        0.507
Solyc07g017770.2.1
Uncharacterized protein (402 aa)
   
        0.506
Solyc04g049130.2.1
Uncharacterized protein (400 aa)
   
          0.502
Solyc06g054110.1.1
Uncharacterized protein (170 aa)
   
          0.500
Solyc11g044530.1.1
Uncharacterized protein (234 aa)
   
        0.497
Solyc01g079470.2.1
Uncharacterized protein (124 aa)
   
          0.497
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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