STRINGSTRING
AT1 protein (Solanum lycopersicum) - STRING interaction network
AT1 protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1AT1 protein (452 aa)    
Predicted Functional Partners:
CEVI-1
Peroxidase (325 aa)
           
  0.699
ProT3
Proline transporter 3 (442 aa)
           
  0.469
Sl1-MMP
Metalloendoproteinase 1 (356 aa)
           
  0.465
Solyc05g006360.1.1
Matrix metalloproteinases protein 4 (357 aa)
           
  0.426
SlMMP2
Matrix metalloproteinase (363 aa)
           
  0.426
ST2
Sulfate transporter 2 (656 aa)
           
  0.420
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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