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LOC543627 protein (Solanum lycopersicum) - STRING interaction network
"LOC543627" - PSTVd RNA-biding protein, Virp1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543627PSTVd RNA-biding protein, Virp1; PSTVd RNA-binding protein Virp1a; PSTVd RNA-binding protein Virp1b; PSTVd RNA-binding protein Virp1c; PSTVd RNA-binding protein Virp1d (602 aa)    
Predicted Functional Partners:
Solyc01g079210.2.1
Uncharacterized protein (451 aa)
     
 
  0.918
Solyc04g076580.2.1
Uncharacterized protein (169 aa)
     
  0.911
Solyc06g065700.2.1
Uncharacterized protein (685 aa)
     
  0.877
Solyc01g028930.2.1
Uncharacterized protein (203 aa)
     
  0.874
Solyc12g096470.1.1
Uncharacterized protein (138 aa)
       
  0.872
Solyc03g119780.2.1
Uncharacterized protein (1509 aa)
     
  0.863
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.829
Solyc09g098260.1.1
Uncharacterized protein (588 aa)
     
  0.820
Solyc03g112690.1.1
Uncharacterized protein (644 aa)
     
  0.820
Solyc03g083410.2.1
Uncharacterized protein (981 aa)
     
  0.820
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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