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STRINGSTRING
Solyc01g106560.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g106560.2.1" - Unknown protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g106560.2.1Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- pollen tube; Has 543 Blast hits to 512 proteins in 106 species- Archae - 0; Bacteria - 0; Metazoa - 281; Fungi /.../ Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source- NCBI BLink) (307 aa)    
Predicted Functional Partners:
Solyc11g071660.1.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF926 (InterPro-IPR00 /.../ Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (535 aa)
       
      0.840
101263053
Splicing factor PWI domain-containing protein (921 aa)
       
      0.840
101255283
Exocyst subunit exo70 family protein E2 (635 aa)
       
      0.840
Solyc10g006260.2.1
annotation not available (789 aa)
     
      0.766
Solyc10g006250.2.1
annotation not available (151 aa)
     
      0.766
101263482
annotation not available (560 aa)
       
      0.766
101258246
annotation not available (487 aa)
       
      0.766
101266483
annotation not available (634 aa)
       
      0.649
101253336
Unknown protein; LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 speci /.../chae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source- NCBI BLink) (661 aa)
       
      0.649
101255107
annotation not available (542 aa)
       
      0.649
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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