STRINGSTRING
Solyc01g108080.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g108080.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g108080.2.1Uncharacterized protein (414 aa)    
Predicted Functional Partners:
Solyc08g077780.2.1
Uncharacterized protein (339 aa)
       
  0.909
Solyc01g108280.2.1
Uncharacterized protein (362 aa)
       
  0.909
Solyc04g074500.2.1
Uncharacterized protein (335 aa)
       
  0.826
SRK2C
SNF1-related kinase (345 aa)
       
  0.826
Solyc01g103940.2.1
Uncharacterized protein (361 aa)
       
  0.815
Solyc05g056550.2.1
Uncharacterized protein (356 aa)
       
  0.813
Solyc11g010150.1.1
Uncharacterized protein (83 aa)
       
    0.813
Solyc02g090390.2.1
Uncharacterized protein (352 aa)
       
    0.813
Solyc01g096490.2.1
Uncharacterized protein (1633 aa)
       
 
  0.773
Solyc12g096020.1.1
Uncharacterized protein (508 aa)
     
 
  0.736
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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