STRINGSTRING
Solyc01g108150.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g108150.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g108150.2.1Uncharacterized protein (634 aa)    
Predicted Functional Partners:
Solyc06g084120.2.1
Uncharacterized protein (319 aa)
       
      0.571
Solyc07g066630.2.1
Uncharacterized protein (299 aa)
   
 
  0.528
Solyc12g089000.1.1
Uncharacterized protein (537 aa)
           
  0.485
Solyc11g008580.1.1
Uncharacterized protein (591 aa)
           
  0.485
Solyc06g073340.2.1
Uncharacterized protein (550 aa)
           
  0.485
Solyc04g079780.2.1
Uncharacterized protein (522 aa)
           
  0.485
Solyc01g109280.2.1
Uncharacterized protein (590 aa)
           
  0.485
Solyc01g044340.2.1
Uncharacterized protein (137 aa)
           
  0.485
Solyc01g005650.1.1
Uncharacterized protein (522 aa)
           
  0.485
Solyc12g056120.1.1
6-phosphogluconate dehydrogenase, decarboxylating ; Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH (496 aa)
           
  0.470
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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