STRINGSTRING
Solyc01g108230.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g108230.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g108230.2.1Uncharacterized protein (288 aa)    
Predicted Functional Partners:
Solyc03g006630.2.1
Uncharacterized protein (486 aa)
     
 
  0.941
Solyc02g079030.2.1
Uncharacterized protein (477 aa)
     
 
  0.941
LOC543709
Putative sphingolipid delta 4 desaturase DES-1 (332 aa)
         
  0.941
Solyc06g054340.1.1
Uncharacterized protein (190 aa)
         
  0.940
Solyc05g007460.2.1
Uncharacterized protein (269 aa)
       
  0.940
Solyc01g010860.2.1
Uncharacterized protein (266 aa)
       
  0.940
Solyc05g008790.2.1
Uncharacterized protein (604 aa)
     
 
  0.937
Solyc09g091850.2.1
Non-lysosomal glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (936 aa)
         
  0.907
Solyc01g103230.2.1
Non-lysosomal glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (954 aa)
         
  0.907
Solyc04g072190.2.1
Uncharacterized protein (93 aa)
         
    0.900
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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