STRINGSTRING
Solyc01g108430.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g108430.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g108430.2.1Uncharacterized protein (262 aa)    
Predicted Functional Partners:
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
       
  0.853
Solyc03g083430.2.1
Uncharacterized protein (509 aa)
       
    0.795
Solyc11g005110.1.1
Uncharacterized protein (523 aa)
     
  0.747
Solyc01g094540.2.1
Small nuclear ribonucleoprotein-associated protein (280 aa)
       
  0.738
Solyc06g082360.2.1
Uncharacterized protein (233 aa)
       
  0.737
Solyc09g075200.2.1
Uncharacterized protein (253 aa)
       
  0.730
Solyc10g081290.1.1
Uncharacterized protein (207 aa)
       
    0.730
Solyc10g081090.1.1
Uncharacterized protein (127 aa)
       
    0.730
Solyc10g081070.1.1
Uncharacterized protein (684 aa)
       
    0.730
Solyc07g041790.1.1
Uncharacterized protein (73 aa)
       
    0.730
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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