STRINGSTRING
Solyc01g109300.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g109300.2.1" - ISPH protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g109300.2.1ISPH protein (461 aa)    
Predicted Functional Partners:
LOC543704
GcpE (740 aa)
 
  0.994
IPI
Isopentenyl diphosphate isomerase (235 aa)
         
  0.956
GPS
Geranyl pyrophosphate synthase (415 aa)
   
 
  0.952
GGPS1
Geranylgeranyl pyrophosphate synthase 1 (365 aa)
   
 
  0.939
Solyc09g008920.2.1
Uncharacterized protein (334 aa)
   
 
  0.939
Solyc07g064660.1.1
Uncharacterized protein (291 aa)
   
 
  0.939
GGPS2
Geranylgeranyl pyrophosphate synthase 2 (363 aa)
   
 
  0.939
Solyc02g085720.1.1
Uncharacterized protein (373 aa)
   
 
  0.939
Solyc02g085700.1.1
Geranylgeranyl pyrophosphate synthetase-like protein (360 aa)
   
 
  0.939
FPS1
Farnesyl pyrophosphate synthase (342 aa)
   
 
  0.938
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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