• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g109360.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g109360.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g109360.2.1annotation not available (328 aa)    
Predicted Functional Partners:
101263723
Uncharacterized protein; methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; Belongs to the class-I aminoacyl-tRNA synthetase family (812 aa)
   
 
  0.993
101251979
Uncharacterized protein; glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative; Belongs to the class-I aminoacyl-tRNA synthetase family (790 aa)
   
   
  0.983
WARS
Nucleotidylyl transferase superfamily protein; Belongs to the class-I aminoacyl-tRNA synthetase family (403 aa)
 
   
  0.980
101253854
Uncharacterized protein; tRNA synthetase class I (I, L, M and V) family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1182 aa)
   
 
  0.979
Solyc01g008310.2.1
tRNA synthetase beta subunit family protein (576 aa)
   
   
  0.969
101244561
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (1010 aa)
   
 
  0.968
101251229
Probable alanine--tRNA ligase, chloroplastic; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (987 aa)
   
 
  0.968
101251377
annotation not available (564 aa)
   
 
  0.966
101256769
Uncharacterized protein; Cysteinyl-tRNA synthetase, class Ia family protein (569 aa)
   
 
  0.966
101255211
Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (521 aa)
      
  0.963
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (13%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >