STRINGSTRING
Solyc01g109640.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g109640.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g109640.2.1Uncharacterized protein (165 aa)    
Predicted Functional Partners:
Solyc06g043030.2.1
Uncharacterized protein (1138 aa)
       
  0.966
Solyc03g119270.1.1
AP-3 complex subunit delta ; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles (970 aa)
       
 
  0.960
Solyc08g075310.2.1
Uncharacterized protein (968 aa)
     
  0.927
Solyc05g005780.2.1
Uncharacterized protein (879 aa)
     
  0.927
Solyc04g025870.2.1
Uncharacterized protein (877 aa)
     
  0.927
Solyc11g066770.1.1
Uncharacterized protein (434 aa)
     
  0.912
Solyc11g066760.1.1
Uncharacterized protein (467 aa)
     
  0.912
Solyc11g066750.1.1
Uncharacterized protein (59 aa)
     
  0.912
Solyc06g074650.2.1
Uncharacterized protein (1017 aa)
     
  0.912
Solyc00g249910.1.1
Annotation not available (85 aa)
     
  0.912
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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