STRINGSTRING
Solyc01g110180.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g110180.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g110180.2.1annotation not available (203 aa)    
Predicted Functional Partners:
HY5
Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light- induced genes (158 aa)
       
 
  0.839
COP1
Uncharacterized protein; COP1 homolog (677 aa)
       
 
  0.834
101249698
annotation not available (672 aa)
       
 
  0.834
101263633
annotation not available (396 aa)
     
   
  0.683
Solyc08g005930.1.1
annotation not available (386 aa)
     
   
  0.683
101252431
annotation not available (394 aa)
     
   
  0.683
101257625
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (1054 aa)
           
  0.644
Solyc00g170200.1.1
alpha/beta-Hydrolases superfamily protein (127 aa)
     
   
  0.637
101262021
Uncharacterized protein; B-box 32 (261 aa)
       
 
  0.609
101268621
GATA transcription factor; Transcriptional activator that specifically binds 5’- GATA-3’ or 5’-GAT-3’ motifs within gene promoters (256 aa)
           
  0.583
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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