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STRINGSTRING
Solyc01g110260.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g110260.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g110260.1.1annotation not available (186 aa)    
Predicted Functional Partners:
101250242
Uncharacterized protein; 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (377 aa)
           
  0.474
101268048
annotation not available (189 aa)
           
  0.455
Solyc01g007780.2.1
annotation not available (160 aa)
           
  0.455
101246365
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Isoprenoid F (256 aa)
           
  0.443
DXR
Uncharacterized protein; 1-deoxy-D-xylulose-5-phosphate reductoisomerase (475 aa)
           
  0.438
GPS
Geranyl pyrophosphate synthase ; Belongs to the FPP/GGPP synthase family (415 aa)
           
  0.414
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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