STRINGSTRING
Solyc01g110460.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g110460.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g110460.2.1Uncharacterized protein (350 aa)    
Predicted Functional Partners:
Solyc06g074960.2.1
Uncharacterized protein (676 aa)
           
  0.468
Solyc02g085860.2.1
Uncharacterized protein (348 aa)
           
  0.457
Solyc02g085850.1.1
Uncharacterized protein (153 aa)
           
  0.457
CPT4
Cis-prenyltransferase 4 (308 aa)
           
  0.437
Solyc10g085140.1.1
Alkyl transferase (122 aa)
           
  0.437
NDPS1
Dimethylallylcistransferase, chloroplastic (305 aa)
           
  0.437
CPT2
Cis-prenyltransferase 2 (183 aa)
           
  0.437
CPT7
Dehydrodolichyl diphosphate synthase 2 (287 aa)
           
  0.437
Solyc06g059990.2.1
Alkyl transferase (304 aa)
           
  0.437
CPT3
Dehydrodolichyl diphosphate synthase 6 (165 aa)
           
  0.437
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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