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Solyc01g111020.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g111020.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Solyc01g111020.2.1Uncharacterized protein; Pentatricopeptide repeat (PPR) superfamily protein (1153 aa)    
Predicted Functional Partners:
101251873
Uncharacterized protein; High chlorophyll fluorescent 107 (681 aa)
     
   
  0.861
101268103
Fibronectin type III domain-containing protein (647 aa)
       
 
  0.807
Solyc05g008030.1.1
annotation not available (269 aa)
     
   
  0.800
Solyc07g062890.2.1
annotation not available (123 aa)
           
  0.798
101245773
Uncharacterized protein; Metaxin-related (326 aa)
           
  0.798
Solyc06g065730.2.1
annotation not available (1437 aa)
           
  0.798
101255406
Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway (640 aa)
           
  0.798
101265818
Ubiquitin interaction motif-containing protein (635 aa)
           
  0.798
Solyc03g115180.1.1
annotation not available (400 aa)
           
  0.798
101250484
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Beta-Casp domain (InterPro-IPR022712); BEST Arabidopsis thaliana protein match is- cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR-AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species- A /.../- 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source- NCBI BLink) (693 aa)
           
  0.798
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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