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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SKP1 protein (Solanum lycopersicum) - STRING interaction network
"SKP1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKP1annotation not available (156 aa)    
Predicted Functional Partners:
101258625
annotation not available (370 aa)
     
 
  0.892
Coi1
Coronatine-insensitive 1 (603 aa)
       
 
  0.878
101249890
annotation not available (116 aa)
     
 
  0.811
101259644
annotation not available (118 aa)
     
 
  0.811
Solyc03g007890.2.1
Heat shock protein 90 (699 aa)
     
 
  0.784
Solyc01g102270.2.1
Uncharacterized protein; Anaphase-promoting complex/cyclosome 11 (50 aa)
     
 
  0.781
csn5
CSN5 protein (367 aa)
     
 
  0.769
Solyc06g082600.2.1
Ubiquitin-conjugating enzyme E2-17 kDa; Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins (148 aa)
     
 
  0.767
101243848
F-box protein 7 (327 aa)
     
 
  0.750
101265098
annotation not available (555 aa)
       
 
  0.737
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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