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STRINGSTRING
101248056 protein (Solanum lycopersicum) - STRING interaction network
"101248056" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101248056Uncharacterized protein; RNA binding (365 aa)    
Predicted Functional Partners:
101255370
Uncharacterized protein; Acclimation of photosynthesis to environment (285 aa)
   
        0.911
101263124
annotation not available (223 aa)
   
        0.903
101244581
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protei /.../nknown function DUF3007 (InterPro-IPR021562); Has 236 Blast hits to 236 proteins in 83 species- Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source- NCBI BLink) (197 aa)
   
        0.901
109120519
annotation not available (223 aa)
   
        0.898
101255322
Phosphoribulokinase (400 aa)
   
        0.894
Solyc08g079110.2.1
Pentapeptide repeat-containing protein (264 aa)
   
        0.891
101258104
Thylakoid lumen 18.3 kDa protein (289 aa)
   
        0.888
101254562
Uncharacterized protein; NAD(P)-linked oxidoreductase superfamily protein (398 aa)
     
        0.882
Solyc02g068270.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; Has 42 Blast hits to /.../teins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink) (215 aa)
     
        0.882
101253094
Uncharacterized protein; Chloroplast RNA binding (379 aa)
   
        0.879
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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