Solyc02g014860.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc02g014860.2.1

Uncharacterized protein (457 aa)

Predicted Functional Partners:

Solyc02g087230.2.1

0.875

Solyc11g069940.1.1

0.407

Solyc11g069860.1.1

0.407

Solyc10g008930.1.1

0.407

Solyc10g008150.1.1

0.407

Solyc09g074600.1.1

0.407

Solyc09g074590.1.1

0.407

Solyc09g074580.1.1

0.407

Solyc09g074570.1.1

0.407

Solyc08g062970.1.1

0.407

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc02g014860.2.1	Solyc02g087230.2.1	Uncharacterized protein	Uncharacterized protein	0.875
Solyc02g014860.2.1	Solyc08g062970.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc09g074570.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc09g074580.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc09g074590.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc09g074600.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc10g008150.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc10g008930.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc11g069860.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g014860.2.1	Solyc11g069940.1.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc02g087230.2.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.875
Solyc08g062970.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc09g074570.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc09g074580.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc09g074590.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc09g074600.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc10g008150.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc10g008930.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc11g069860.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407
Solyc11g069940.1.1	Solyc02g014860.2.1	Uncharacterized protein	Uncharacterized protein	0.407

Network

Cooccurrence

Experiments

Neighborhood

Textmining

Fusion

Databases

Coexpression

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