• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc02g021100.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g021100.2.1" - DNA glycosylase superfamily protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g021100.2.1DNA glycosylase superfamily protein (480 aa)    
Predicted Functional Partners:
Solyc03g111600.2.1
DNA-(apurinic or apyrimidinic site) lyase; DNAse I-like superfamily protein (377 aa)
           
  0.852
101249832
annotation not available (168 aa)
           
  0.741
Solyc07g062430.2.1
Uncharacterized protein; Phosphoesterase (343 aa)
           
  0.695
101262281
annotation not available (802 aa)
           
  0.683
101247661
annotation not available (300 aa)
           
  0.519
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
           
  0.442
101257206
Uncharacterized protein; APRATAXIN-like (746 aa)
           
  0.429
101255875
DNA-(apurinic or apyrimidinic site) lyase; Apurinic endonuclease-redox protein (539 aa)
           
  0.429
Solyc03g033530.2.1
Uncharacterized protein; Endonuclease/exonuclease/phosphatase family protein (591 aa)
           
  0.429
tbn1
Endonuclease 1 (302 aa)
           
  0.424
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (13%) [HD]