STRINGSTRING
cul4 protein (Solanum lycopersicum) - STRING interaction network
"cul4" - Cullin 4 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul4Cullin 4 (785 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
  0.997
Solyc12g009120.1.1
Uncharacterized protein (116 aa)
       
  0.979
Solyc06g062940.2.1
Uncharacterized protein (118 aa)
       
  0.979
LOC543616
CSN5 protein (367 aa)
       
  0.973
Solyc06g073150.2.1
Uncharacterized protein (367 aa)
       
  0.973
Solyc01g091650.2.1
Uncharacterized protein (440 aa)
     
  0.972
Solyc04g080160.2.1
Uncharacterized protein (397 aa)
     
  0.971
Solyc04g082410.2.1
Uncharacterized protein (322 aa)
     
  0.969
Solyc02g086470.2.1
Uncharacterized protein (514 aa)
       
  0.966
Solyc02g093920.2.1
Uncharacterized protein (428 aa)
     
  0.963
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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