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STRINGSTRING
Solyc02g032790.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g032790.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g032790.1.1annotation not available (302 aa)    
Predicted Functional Partners:
101266480
Uncharacterized protein; Ubiquitin-specific protease 24; Belongs to the peptidase C19 family (534 aa)
     
 
  0.887
101257506
annotation not available (533 aa)
     
 
  0.887
Solyc08g014060.2.1
Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF- 2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon- dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins (581 aa)
     
 
  0.648
101267059
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (717 aa)
     
 
  0.613
101255721
Uncharacterized protein; tRNA/rRNA methyltransferase (SpoU) family protein (1829 aa)
           
  0.607
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
      0.596
Solyc02g062620.2.1
CAP-binding protein 20 (257 aa)
       
      0.552
101261127
annotation not available (623 aa)
     
 
  0.535
101259622
annotation not available (633 aa)
     
 
  0.535
Solyc05g049950.2.1
annotation not available (281 aa)
     
      0.528
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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