STRINGSTRING
Solyc02g038750.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g038750.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g038750.2.1Uncharacterized protein (354 aa)    
Predicted Functional Partners:
Solyc11g066630.1.1
Uncharacterized protein (145 aa)
     
      0.909
Solyc06g074720.2.1
Uncharacterized protein (219 aa)
     
      0.909
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
       
      0.683
Solyc02g088780.2.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (423 aa)
   
   
  0.603
Solyc10g005870.2.1
Peptidyl-prolyl cis-trans isomerase (213 aa)
     
      0.557
Solyc09g008650.2.1
Peptidyl-prolyl cis-trans isomerase (232 aa)
     
      0.557
Solyc04g082660.2.1
Peptidyl-prolyl cis-trans isomerase (222 aa)
     
      0.557
Solyc04g015040.2.1
Peptidyl-prolyl cis-trans isomerase (235 aa)
     
      0.557
Solyc04g010190.1.1
Uncharacterized protein (189 aa)
     
      0.557
Solyc03g119150.2.1
Peptidyl-prolyl cis-trans isomerase (260 aa)
     
      0.557
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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