STRINGSTRING
Solyc02g062620.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g062620.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g062620.2.1Uncharacterized protein (257 aa)    
Predicted Functional Partners:
Solyc10g005530.2.1
Uncharacterized protein (861 aa)
     
  0.999
Solyc09g008470.2.1
Uncharacterized protein (345 aa)
     
  0.983
Solyc09g098390.2.1
Uncharacterized protein (355 aa)
     
  0.968
LOC778316
Similar to u1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (197 aa)
     
  0.967
Solyc01g100990.2.1
Uncharacterized protein (150 aa)
     
  0.967
Solyc01g067830.2.1
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (199 aa)
     
  0.967
Solyc05g017890.2.1
Uncharacterized protein (1858 aa)
       
  0.962
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
       
  0.962
Solyc09g075130.2.1
Uncharacterized protein (109 aa)
     
  0.957
Solyc02g085420.2.1
Uncharacterized protein (478 aa)
     
0.956
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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