STRINGSTRING
Solyc02g062940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g062940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g062940.2.1Uncharacterized protein (656 aa)    
Predicted Functional Partners:
Solyc05g018300.2.1
Uncharacterized protein (1080 aa)
     
  0.976
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
     
 
  0.750
Solyc04g006930.2.1
Uncharacterized protein (800 aa)
     
  0.747
Solyc11g067020.1.1
Histone deacetylase (430 aa)
       
  0.731
Solyc09g091440.2.1
Histone deacetylase (498 aa)
       
  0.731
Solyc06g071680.2.1
Histone deacetylase (471 aa)
       
  0.731
Solyc03g112410.1.1
Histone deacetylase (449 aa)
       
  0.731
Solyc12g094440.1.1
Uncharacterized protein (285 aa)
       
  0.718
Solyc12g016190.1.1
Uncharacterized protein (316 aa)
       
  0.718
Solyc09g091960.2.1
Uncharacterized protein (462 aa)
       
  0.718
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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