STRINGSTRING
Solyc02g063170.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g063170.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g063170.2.1Uncharacterized protein (246 aa)    
Predicted Functional Partners:
Solyc03g116870.2.1
Uncharacterized protein (463 aa)
   
          0.517
Solyc01g097820.2.1
Uncharacterized protein (250 aa)
   
          0.517
Solyc05g014190.2.1
Uncharacterized protein (209 aa)
   
          0.515
Solyc12g096100.1.1
Uncharacterized protein (193 aa)
   
          0.508
Solyc03g006540.2.1
Uncharacterized protein (180 aa)
   
          0.507
Solyc07g017770.2.1
Uncharacterized protein (402 aa)
   
          0.482
Solyc00g127670.1.1
Annotation not available (158 aa)
   
          0.476
rbcL
Ribulose bisphosphate carboxylase large chain ; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (477 aa)
       
      0.468
atpB
ATP synthase subunit beta, chloroplastic ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (609 aa)
       
      0.468
Solyc03g111700.2.1
Uncharacterized protein (337 aa)
   
          0.456
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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