STRINGSTRING
LOC543920 protein (Solanum lycopersicum) - STRING interaction network
"LOC543920" - Cystathionine gamma synthase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543920Cystathionine gamma synthase (540 aa)    
Predicted Functional Partners:
Solyc08g014340.2.1
Uncharacterized protein (386 aa)
   
  0.975
Solyc10g012370.2.1
Cysteine synthase (351 aa)
   
  0.975
Solyc09g082060.2.1
Cysteine synthase (325 aa)
   
  0.975
Solyc01g097950.2.1
Cysteine synthase (323 aa)
   
  0.975
Solyc01g097940.1.1
Uncharacterized protein (196 aa)
   
  0.975
Solyc01g097930.2.1
Cysteine synthase (323 aa)
   
  0.975
Solyc01g097920.2.1
Cysteine synthase (356 aa)
   
  0.975
Solyc01g094790.2.1
Cysteine synthase (357 aa)
   
  0.975
Solyc07g065470.2.1
Uncharacterized protein (421 aa)
   
  0.971
sir
Sulfite reductase (691 aa)
   
 
  0.965
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]