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STRINGSTRING
101243664 protein (Solanum lycopersicum) - STRING interaction network
"101243664" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101243664annotation not available (205 aa)    
Predicted Functional Partners:
Solyc04g014700.2.1
Expressed protein (92 aa)
           
  0.930
101247160
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Mediator complex subunit Med27 (InterPro-IPR021627); Has 112 Blast hits to 112 proteins in 38 species- Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink) (411 aa)
           
  0.901
101264702
Uncharacterized protein; RNA polymerase II transcription mediators (663 aa)
           
  0.852
Solyc08g078240.2.1
MED32; Has 41 Blast hits to 40 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (172 aa)
           
  0.844
Solyc12g044640.1.1
annotation not available (249 aa)
       
 
  0.815
Solyc03g121210.2.1
annotation not available (232 aa)
       
 
  0.815
101263389
Uncharacterized protein; Mediator subunit 8 (530 aa)
           
  0.778
101246818
annotation not available (401 aa)
           
  0.768
Solyc02g087180.2.1
annotation not available (425 aa)
           
  0.768
Solyc04g039950.2.1
Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (1933 aa)
           
  0.766
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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