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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc02g069660.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g069660.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g069660.2.1annotation not available (291 aa)    
Predicted Functional Partners:
101256582
annotation not available (824 aa)
     
 
  0.951
101244137
annotation not available (696 aa)
     
 
  0.947
Solyc11g066550.1.1
annotation not available (833 aa)
     
 
  0.874
Solyc11g066540.1.1
annotation not available (234 aa)
     
 
  0.874
101255790
annotation not available (350 aa)
     
 
  0.872
101266728
annotation not available (778 aa)
     
 
  0.751
101268609
annotation not available (777 aa)
     
 
  0.751
101254812
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IP /.../7), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species- Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Euk [...] (736 aa)
     
 
  0.748
101252014
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Conserved oligomeric complex COG6 (InterPro-IPR010490); Has 384 Blast hits to 379 proteins in 190 species- Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source- NCB /.../k) (691 aa)
     
   
  0.697
101254422
Conserved oligomeric Golgi complex component-related / COG complex component-related; Belongs to the COG8 family (576 aa)
     
 
  0.696
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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