• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc02g071230.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g071230.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g071230.1.1Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (621 aa)    
Predicted Functional Partners:
101259518
LUC7 N_terminus domain-containing protein (355 aa)
     
 
  0.947
101247022
annotation not available (400 aa)
     
 
  0.941
101256810
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (355 aa)
     
 
  0.924
Solyc02g085420.2.1
U1 small nuclear ribonucleoprotein-70K (478 aa)
     
 
  0.924
cdc5
CDC5-like protein (987 aa)
     
 
  0.922
LOC778316
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (197 aa)
       
 
  0.922
101263748
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (199 aa)
       
 
  0.922
Solyc10g081290.1.1
annotation not available (207 aa)
     
   
  0.918
Solyc10g081090.1.1
annotation not available (127 aa)
     
   
  0.918
Solyc10g081070.1.1
annotation not available (684 aa)
     
   
  0.918
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]