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STRINGSTRING
101258027 protein (Solanum lycopersicum) - STRING interaction network
"101258027" - Protein of unknown function in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101258027Protein of unknown function (DUF565) (154 aa)    
Predicted Functional Partners:
Solyc10g085930.1.1
Protein of unknown function (DUF565) (237 aa)
   
   
  0.964
Solyc03g063060.2.1
Protein of unknown function (DUF565) (199 aa)
     
   
  0.960
LOC543696
Violaxanthin de-epoxidase ; Belongs to the calycin superfamily. Lipocalin family (478 aa)
     
   
  0.684
101243864
Cytochrome b6-f complex iron-sulfur subunit; Photosynthetic electron transfer C (231 aa)
           
  0.610
KN1
Homeotic protein knotted-1; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)
           
  0.454
101257199
annotation not available (1274 aa)
           
  0.451
101258879
annotation not available (1264 aa)
           
  0.451
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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