STRINGSTRING
Solyc02g080040.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g080040.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g080040.2.1Uncharacterized protein (445 aa)    
Predicted Functional Partners:
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
   
  0.979
Solyc11g067060.1.1
Uncharacterized protein (238 aa)
     
  0.915
Solyc03g111380.2.1
Tubulin gamma chain ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (474 aa)
       
 
  0.900
Solyc02g070780.2.1
DNA helicase (787 aa)
       
 
  0.898
Solyc04g081640.1.1
Uncharacterized protein (158 aa)
       
  0.859
Solyc04g081630.1.1
Uncharacterized protein (267 aa)
       
  0.859
Solyc04g081570.2.1
Uncharacterized protein (812 aa)
       
  0.859
Solyc01g090750.2.1
Uncharacterized protein ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (545 aa)
       
 
  0.825
Solyc01g088080.2.1
Uncharacterized protein ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (541 aa)
     
      0.812
Solyc12g056770.1.1
Uncharacterized protein (256 aa)
       
      0.812
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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