STRINGSTRING
Solyc02g080990.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g080990.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g080990.1.1Uncharacterized protein (540 aa)    
Predicted Functional Partners:
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
  0.975
Solyc06g068320.2.1
Uncharacterized protein (515 aa)
   
  0.951
Solyc03g117330.2.1
Uncharacterized protein (504 aa)
   
  0.951
Solyc01g096870.2.1
Uncharacterized protein (547 aa)
   
  0.951
Solyc02g080980.2.1
Uncharacterized protein (425 aa)
 
          0.949
LARS
leucine--tRNA ligase, cytoplasmic (1079 aa)
     
 
  0.877
Solyc12g019110.1.1
Uncharacterized protein (700 aa)
     
 
  0.857
Solyc02g076720.2.1
Uncharacterized protein (1459 aa)
   
   
  0.856
Solyc01g107270.2.1
Uncharacterized protein (1333 aa)
   
   
  0.856
Solyc11g012140.1.1
Uncharacterized protein (1182 aa)
   
0.851
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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