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T6 protein (Solanum lycopersicum) - STRING interaction network
"T6" - Homeobox protein knotted-1-like LET6 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T6Homeobox protein knotted-1-like LET6 ; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)    
Predicted Functional Partners:
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.786
FALSIFLORA
FLORICAULA/LEAFY-like protein (429 aa)
           
  0.783
lanceolate
Lanceolate (400 aa)
           
  0.703
VAHOX1
Homeobox (323 aa)
       
 
  0.699
PTS
PETROSELINUM (171 aa)
           
  0.697
Solyc03g114760.2.1
Hop-interacting protein THI110 (336 aa)
       
      0.683
BL3
Hop-interacting protein THI035 (644 aa)
       
 
0.652
fasciated
FAS protein (177 aa)
           
  0.643
Solyc09g011380.2.1
Uncharacterized protein (504 aa)
       
 
0.637
LOC543604
Phantastica (360 aa)
     
 
  0.618
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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