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STRINGSTRING
Solyc02g082110.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g082110.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g082110.2.1annotation not available (181 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
 
  0.989
101263464
annotation not available (521 aa)
     
 
  0.970
Solyc03g033950.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cytosol, nucleus; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown f /.../n DUF2050, pre-mRNA-splicing factor (InterPro-IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species- Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source- NCBI BLink) (487 aa)
     
 
  0.968
101251604
Uncharacterized protein; Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (492 aa)
     
 
  0.962
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
       
 
  0.958
Solyc03g006520.2.1
annotation not available (591 aa)
     
 
  0.956
101264481
annotation not available (586 aa)
     
 
  0.956
101245685
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); Has 30201 Blast hits to 17322 proteins in 780 sp /.../ Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (639 aa)
     
 
  0.950
DHX16
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (886 aa)
     
 
  0.937
Solyc09g011060.2.1
annotation not available (832 aa)
     
 
  0.937
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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