STRINGSTRING
Solyc02g083140.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g083140.2.1" - Ribonuclease E in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g083140.2.1Ribonuclease E (935 aa)    
Predicted Functional Partners:
Solyc10g085550.1.1
Enolase (444 aa)
     
 
  0.925
Solyc10g045050.1.1
Uncharacterized protein (107 aa)
     
 
  0.925
PGH1
Enolase (444 aa)
     
 
  0.925
Solyc06g076650.2.1
Uncharacterized protein (473 aa)
     
 
  0.925
Solyc03g114500.2.1
Uncharacterized protein (488 aa)
     
 
  0.925
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
   
  0.903
Solyc01g110990.2.1
Uncharacterized protein (1111 aa)
   
  0.903
Solyc03g007980.1.1
Uncharacterized protein (331 aa)
     
 
  0.864
Solyc08g066140.2.1
Uncharacterized protein (153 aa)
   
  0.858
Solyc08g066120.2.1
Uncharacterized protein (481 aa)
   
  0.858
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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