STRINGSTRING
VKOR protein (Solanum lycopersicum) - STRING interaction network
"VKOR" - Vitamin K epoxide reductase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VKORVitamin K epoxide reductase (373 aa)    
Predicted Functional Partners:
psaD
Photosystem I reaction center subunit II, chloroplastic ; PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center. PSAD may encode the ferredoxin-docking protein (208 aa)
   
 
      0.766
Solyc08g006540.2.1
Peptidyl-prolyl cis-trans isomerase (263 aa)
     
 
  0.677
Solyc07g064940.2.1
Uncharacterized protein (267 aa)
     
 
  0.671
Solyc02g068930.2.1
Uncharacterized protein (179 aa)
   
 
      0.665
Solyc10g039270.1.1
Peptidyl-prolyl cis-trans isomerase (257 aa)
     
 
  0.653
Solyc08g079110.2.1
Uncharacterized protein (264 aa)
     
 
  0.542
Solyc03g082890.2.1
Uncharacterized protein (233 aa)
     
      0.526
Solyc01g006130.2.1
Uncharacterized protein (228 aa)
     
      0.524
LOC543696
Violaxanthin de-epoxidase (478 aa)
     
      0.523
Solyc08g075100.2.1
Uncharacterized protein (356 aa)
   
          0.518
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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