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STRINGSTRING
Solyc02g084400.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g084400.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g084400.2.1annotation not available (595 aa)    
Predicted Functional Partners:
Solyc04g076370.2.1
annotation not available (441 aa)
           
  0.763
Solyc01g079320.2.1
annotation not available (485 aa)
           
  0.685
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family (323 aa)
     
 
  0.614
101267302
Uncharacterized protein; Magnesium-protoporphyrin IX methyltransferase (327 aa)
     
 
  0.614
Solyc03g114300.2.1
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate (401 aa)
         
  0.579
101250449
3’-5’-exoribonuclease family protein (243 aa)
           
  0.566
101258138
Uncharacterized protein; CLP protease regulatory subunit X (570 aa)
     
   
  0.563
101255044
Uncharacterized protein; RNA binding (RRM/RBD/RNP motifs) family protein (129 aa)
           
  0.556
Solyc07g005930.2.1
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (992 aa)
           
  0.550
101256668
Uncharacterized protein; Pentatricopeptide repeat (PPR) superfamily protein (814 aa)
           
  0.548
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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