STRINGSTRING
Solyc02g086470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g086470.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g086470.2.1Uncharacterized protein (514 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
  0.982
Solyc02g070460.2.1
Uncharacterized protein (802 aa)
       
  0.966
cul4
Cullin 4 (785 aa)
       
  0.966
Solyc06g076860.2.1
Uncharacterized protein (532 aa)
     
   
  0.897
Solyc06g008510.2.1
Uncharacterized protein (583 aa)
     
 
  0.858
Solyc03g019960.2.1
Uncharacterized protein (471 aa)
     
 
  0.858
Solyc01g006140.2.1
Uncharacterized protein (572 aa)
     
 
  0.858
Solyc11g068400.1.1
Uncharacterized protein (72 aa)
       
      0.812
Solyc08g067020.2.1
Cytochrome b-c1 complex subunit 7 ; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (123 aa)
       
      0.812
Solyc04g051350.2.1
Ribonucleoside-diphosphate reductase ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (808 aa)
     
   
  0.735
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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