STRINGSTRING
fdh protein (Solanum lycopersicum) - STRING interaction network
"fdh" - Formate dehydrogenase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhFormate dehydrogenase (381 aa)    
Predicted Functional Partners:
cMDH
Malate dehydrogenase (334 aa)
   
  0.915
Solyc08g078490.2.1
Uncharacterized protein (333 aa)
         
  0.900
Solyc06g060770.2.1
Uncharacterized protein (323 aa)
         
  0.900
Solyc02g092530.2.1
Uncharacterized protein (420 aa)
         
    0.900
Solyc03g111140.2.1
Malate synthase (571 aa)
     
 
  0.889
Solyc03g111130.1.1
Malate synthase (550 aa)
     
 
  0.889
Solyc03g111120.2.1
Uncharacterized protein (244 aa)
     
 
  0.889
Solyc12g014180.1.1
Malate dehydrogenase (342 aa)
   
  0.871
Solyc09g091070.1.1
Malate dehydrogenase (298 aa)
   
  0.871
mMDH
Malate dehydrogenase (346 aa)
   
  0.871
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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