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STRINGSTRING
Solyc02g087390.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc02g087390.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc02g087390.1.1annotation not available (509 aa)    
Predicted Functional Partners:
Solyc04g049120.2.1
Uncharacterized protein; Duplicated homeodomain-like superfamily protein (1580 aa)
     
 
  0.862
101249807
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (285 aa)
     
 
  0.789
101251156
annotation not available (316 aa)
     
 
  0.789
101265586
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (462 aa)
     
 
  0.789
Solyc04g028560.2.1
annotation not available (777 aa)
     
 
  0.780
101257458
Uncharacterized protein; Relative of early flowering 6 (1252 aa)
     
 
  0.780
101259264
Pathogenesis related homeodomain protein A (707 aa)
     
 
  0.765
101247266
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (796 aa)
     
 
  0.765
101245213
PHD finger protein-related (258 aa)
     
 
  0.729
101251224
RING/FYVE/PHD zinc finger superfamily protein (236 aa)
     
 
  0.729
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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